Preheat oven to 350 degrees and line a cookie sheet with parchment or a baking mat.
In a small bowl, whisk together the pumpkin, oil, sugar, and vanilla.
Continue with the baking soda and sea salt.
Mix in the flours to form a stiff dough that is easy enough to handle and roll into a ball. If your pumpkin had more water in it, you may need to add some more flour (any) to achieve this.
Mix in the chocolate chips.
Roll approximately 1½ tablespoons of dough into a smooth golf ball sized ball. Place on cookie sheet and press down gently to flatten. Larger cookies are certainly fine too, just cook longer!
Bake for 10 minutes until just set and remove from oven. Cookies will be soft, but they firm up nicely well fully cooled.