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You are here: Home / Dessert / The Best Paleo Chocolate Cupcakes

The Best Paleo Chocolate Cupcakes

January 27, 2019 By Tessa 21 Comments

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The best paleo chocolate cupcakes are no longer a pipe dream…they are here…and they are good by ANYONE’S standards! 

Rich chocolate flavor, and a tender, spongy crumb!  Come see how easy it is to make a totally grain free and delicious chocolate cupcake!

vertical image of a chocolate cupcake in a colorful paper wrapper with a swirl of white buttercream frosting and sp

A delicious, moist, and paleo cupcake (or cake!) for you next celebration!!

I am always striving to sneak some healthier foods into my kids’ treats….but until now the paleo chocolate cupcake had been a work in progress.  We already have our favorite gluten free vegan vanilla cupcake, but mom wanted a grain free one too!

As I have gained more experience working with paleo flours, I have learned some of their unique traits and needs.    

But how to ensure a lovely moist crumb that I so adore?! Hmmm…

As an added bonus, these have been vetted out by the ever picky ‘friends,’ category.  They just think they are good cupcakes, period.  I struggle with the pallets of some amigos, as they are used to store bought overly sweetened and sugared confections!

an arrangement of multiple chocolate cupcakes with a hite buttercream frosting on a white washed wooden board

A Secret Ingredient

When I was young, my grandma used to take a box mix of cake, and use a whole can of pears as part of the liquid.  While I didn’t know why then, that cake was always one of my favorites!!   It was so deliciously moist!  Of course I now know that pureed fruits and vegetables can add that coveted moisture into any baked good.  Kind of like in my gluten free vegan chocolate cake.

I am not sure why I didn’t think of it before, but I finally decided to use some applesauce as part of the liquid ingredients to create a really moist cake, and it worked beautifully.  

I have a hunch that other pureed fruits and vegetables would work too, I just have not tested them.

halved frosted chococlate cupcake help in hand for close up

How To Frost The Best Paleo Chocolate Cupcake!?

We have several frostings we rotate though….but you can top these beauties with any favorite frosting.

  • For a simple frosting, I melt some dark chocolate and butter (or coconut oil) and add a few splashes of milk to thin.  With a sprinkle of flaked sea salt, and a dash of vanilla…voila!! (see pic below)
  • We also love a  traditional buttercream,
  • This  chocolate avocado frosting is serious amaze-balls, no one would ever guess there is avocado in there!
  • And my friend Erin, over @Texanerin Baking has a chocolate vegan frosting that looks to DIE for!!

chocolate cupcakes topped with a white buttercream frosting baked in colorful rainbow papers on a whitewashed wooden surface

Healthier Sprinkles?

In these pictures, I used some regular sprinkles I had on hand that I purchased on accident online, thinking they were dyed with natural colors…wrong-o!  As soon as opened the box…I knew I had not looked carefully enough at the labels before clicking ‘buy’!  But they look pretty, so I went with it.

And lets get this out of the way:

a.)  sprinkles don’t actually TASTE good to most people, they have a funky texture and zero flavor!

b.)  kids however,  think everything is better with sprinkles.

c.)  sprinkles are NOT health food nor paleo, not even close!

BUT, if you are a mom, and are making stuff for kiddos, sprinkles can be a fun and colorful addition!!!

But artificial food dyes are no bueno for anyone…so we don’t make a habit of buying products containing them. 

Here are some naturally dyed versions I have tried and enjoyed:

  • Here is what I THOUGHT I was buying when I bought the other ones above: India Tree Natural Sprinkles
  • These decorating sugars looks very pretty!
  • These still have some questionable ingredients, but no food dyes!
  • Here some homemade sprinkles with no nasties made from flaked coconut that are pretty darn beautiful in my book!

chocoalte glazed chocoalte cupcakes in paper liners atop a wooden cutting board

Additional Chocolate Paleo Treats You Could Try!

  • consider trying my Chocolate Hemp Zucchini Bread….it is a crowd favorite, made all in your blender!!
  • Chocolate Avocado Cookies – Nut & Egg Free too!
  • The chocolate version of my super popular and well loved Hail Merry Tart knock offs!
  • Double Chocolate Cookies

a torn chcooclate cupcake with buttercream frosting

Paleo Chocolate Cupcakes Recipe:

If you try this recipe, I want to know!  Please leave a comment below!

chocolate cupcakes topped with a white buttercream frosting baked in colorful rainbow papers on a whitewashed wooden surface

Paleo Chocolate Cupcakes

Tessa the Domestic Diva
5 from 15 votes
Print Recipe Pin Recipe
Prevent your screen from going dark
Prep Time 15 minutes mins
Cook Time 15 minutes mins
Total Time 30 minutes mins
Course Dessert
Cuisine American
Servings 12
Calories 249 kcal

Ingredients
  

Dry:

  • 1 cup almond flour
  • 1/2 cup cocoa powder sifted for lumps if necessary
  • 1/2 cup tapioca flour
  • 1/4 cup coconut flour
  • 1 1/2 teaspoons baking powder
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon sea salt

Wet:

  • 1/2 cup coconut oil or butter, melted
  • 1/2 cup honey
  • 1/2 cup palm sugar or any granulated sugar of choice, may add more to taste as needed
  • 1/2 cup applesauce or pumpkin puree
  • 3 eggs
  • 1 tablespoon vanilla extract
  • 2 teaspoons apple cider vinegar

Instructions
 

  • Preheat oven to 350 degrees, prepare  and grease a 12 space muffin pan.  Alternately, line the spaces with paper baking cups.
  • In the bowl of a mixer, mix all dry ingredients.
  • In a glass measuring cup, mix all the remaining ingredients and pour into the dry mix. Mix well, beating for a couple of minutes.
  • Evenly divide the batter, filling about 3/4 full.
  • Bake in a preheated oven for 18-20 minutes until just set.
  • Once completely cool, top with your desired frosting, or enjoy as is!

Nutrition

Calories: 249kcalCarbohydrates: 28gProtein: 4gFat: 15gSaturated Fat: 8gCholesterol: 40mgSodium: 130mgPotassium: 151mgFiber: 2gSugar: 17gVitamin A: 60IUVitamin C: 0.2mgCalcium: 60mgIron: 1.3mg
Keyword healthy chocolate cupcakes, paleo chocolate cupcake, paleo cupcake recipe, paleo cupcakes
Tried this recipe?Let us know how it was!

pinterest ready two image layout of chococlate cupcakes swirled with a white buttercream frosting and natural sprinkles

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Reader Interactions

Comments

  1. Joni Gomes says

    February 12, 2019 at 9:58 AM

    5 stars
    I have ti find these cupcake liners! Love this recipe, so clean and easy!

    Reply
  2. Mira Richard-Fioramore says

    February 11, 2019 at 6:02 AM

    5 stars
    Oooh yumm! These look amazing! I can’t to make these

    Reply
  3. Kiran Dodeja Smith says

    February 11, 2019 at 5:36 AM

    Perfect timing! Can’t wait to try these cupcakes this week!

    Reply
  4. Catherine Baez Sholl says

    February 10, 2019 at 10:02 PM

    5 stars
    Oh, these look so delicious! Just in time for Valentine’s Day.

    Reply
  5. Katie says

    February 10, 2019 at 11:55 AM

    5 stars
    These are so cute, and the ingredients are delicious!

    Reply
  6. Kari - Get Inspired Everyday! says

    February 9, 2019 at 5:09 PM

    5 stars
    These are so cute and perfect for any kind of celebration!

    Reply
  7. linda spiker says

    February 7, 2019 at 8:03 PM

    5 stars
    Well holy cow those look perfect! That frosting is amazing:)

    Reply
  8. ChihYu says

    February 7, 2019 at 7:06 PM

    You had me at chocolate! Seriously cupcakes are awesome!

    Reply
  9. Renee D Kohley says

    February 7, 2019 at 6:50 AM

    5 stars
    Super fun – great ingredients! I bet they are super moist! Looking forward to trying them – we are coming into birthday season in my house!

    Reply
  10. Daniela says

    February 6, 2019 at 10:09 AM

    I can’t stop drooling over these! I bet they taste just as good as they look! 🙂

    Reply
  11. Megan Stevens says

    February 6, 2019 at 6:02 AM

    5 stars
    I can just tell these turn out perfectly! I love your recipe, so yummy, and what fun to make and present to loved ones. So special.

    Reply
  12. Sylvie says

    February 6, 2019 at 1:34 AM

    They look so good! Who doesn’t love a chocolate cupcake?!

    Reply
  13. Cathy says

    February 5, 2019 at 5:41 PM

    5 stars
    Thank you for this great cupcake recipe! I know it takes a lot of perseverance to get something like this right, but it looks like you’ve nailed it!

    Reply
  14. Meredith says

    February 5, 2019 at 5:35 PM

    5 stars
    These cupcakes look delicious! My littles will be thrilled to have these at our next family celebration… I will be topping mine with mini paleo chocolate chips. Way tastier (IMO) than sprinkles! 😉

    Reply
  15. Hope says

    February 5, 2019 at 1:04 PM

    5 stars
    These look so cute! Love how you have given some suggestions for healthier sprinkles!

    Reply
  16. Annemarie says

    February 5, 2019 at 12:17 PM

    5 stars
    These look so yummy! I love that you can enjoy a special occasion without all the junk.

    Reply
  17. Kelly says

    February 5, 2019 at 10:19 AM

    What a great, healthier Valentine’s treat. Can’t wait to dig in!

    Reply
  18. paleoglutenfreeguy says

    February 5, 2019 at 7:50 AM

    5 stars
    These really do look perfect! Is it weird that I didn’t care for sprinkles as a kid but I think they’re kinda fun now that I’m an adult? But yeah, there are better options. 😉

    Reply
  19. jennifer says

    February 5, 2019 at 4:15 AM

    5 stars
    these look amazing! And I’m with ya on the sprinkles, but gosh the kids sure always want them and I usually thing ahh, a few can’t hurt. Really loving that link you shared for the coconut sprinkles

    Reply
  20. Jean says

    February 4, 2019 at 5:27 PM

    5 stars
    The cutest cupcakes! Love how pretty that frosting is.

    Reply
  21. Raia Todd says

    February 4, 2019 at 2:23 PM

    I have everything I need for these! Just in time for dinner… haha.

    Reply

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My name is Tessa, I am a momma and teacher who learned to cook allergy friendly foods when her third kiddo needed it.   Real food is my obsession. Gluten free, dairy-free, vegan, paleo, and keto recipes for families. Read More About Me An My Family’s Real Food Allergy Journey Here.

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